Chapter 2:

Screen of MicroRNA targets in zebrafish using heterogeneous data sources: a case study for Dre-miR-196

Yanju Zhang, Joost M. Woltering, Fons J. Verbeek

World Academy of Science, Engineering and Technology, 32, 2007

 http://www.waset.org/journals/waset/v32/v32-51.pdf


Chapter 3:

Specificity Enhancement in microRNA Target Prediction through Knowledge Discovery

Yanju Zhang, Jeroen S. de Bruin and Fons J. Verbeek

Machine Learning, ISBN 978-953-307-033-9

 http://www.intechopen.com/articles/show/title/specificity-enhancement-in-microrna-target-prediction-through-knowledge-discovery


Chapter 4:

Comparison and Integration of Target Prediction Algorithms for microRNA Studies

Zhang, Yanju ; Verbeek, Fons J.

Journal of Integrative Bioinformatics,
http://dx.doi.org/10.2390/biecoll-jib-2010-127

 



Chapter 5:

Identification of Common Carp Innate Immune Genes with Whole-Genome Sequencing and RNA-Seq Data

Zhang, Yanju ; Stupka, Elia ; Henkel, Christiaan V. ; Jansen, Hans J. ; Spaink, Herman P. ; Verbeek, Fons J.

Journal of Integrative Bioinformatics
http://dx.doi.org/10.2390/biecoll-jib-2011-169